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Free, publicly-accessible full text available May 17, 2026
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Bajaj, Saurabh; Son, Hojae; Liu, Juelin; Guan, Hui; Serafini, Marco (, Proceedings of the VLDB Endowment)Graph Neural Networks (GNNs) have gained significant attention in recent years due to their ability to learn representations of graph-structured data. Two common methods for training GNNs are mini-batch training and full-graph training. Since these two methods require different training pipelines and systems optimizations, two separate classes of GNN training systems emerged, each tailored for one method. Works that introduce systems belonging to a particular category predominantly compare them with other systems within the same category, offering limited or no comparison with systems from the other category. Some prior work also justifies its focus on one specific training method by arguing that it achieves higher accuracy than the alternative. The literature, however, has incomplete and contradictory evidence in this regard. In this paper, we provide a comprehensive empirical comparison of representative full-graph and mini-batch GNN training systems. We find that the mini-batch training systems consistently converge faster than the full-graph training ones across multiple datasets, GNN models, and system configurations. We also find that minibatch training techniques converge to similar to or often higher accuracy values than full-graph training ones, showing that minibatch sampling is not necessarily detrimental to accuracy. Our work highlights the importance of comparing systems across different classes, using time-to-accuracy rather than epoch time for performance comparison, and selecting appropriate hyperparameters for each training method separately.more » « lessFree, publicly-accessible full text available December 1, 2025
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Liu, Juelin; Polisetty, Sandeep; Guan, Hui; Serafini, Marco (, IEEE)Graph pattern matching is a fundamental problem encountered by many common graph mining tasks and the basic building block of several graph mining systems. This paper explores for the first time how to proactively prune graphs to speed up graph pattern matching by leveraging the structure of the query pattern and the input graph. We propose building auxiliary graphs, which are different pruned versions of the graph, during query execution. This requires careful balancing between the upfront cost of building and managing auxiliary graphs and the gains of faster set operations. To this end, we propose GraphMini, a new system that uses query compilation and a new cost model to minimize the cost of building and maintaining auxiliary graphs and maximize gains. Our evaluation shows that using GraphMini can achieve one order of magnitude speedup compared to state-of-the-art subgraph enumeration systems on commonly used benchmarks.more » « less
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